[codex] Add skills CLI and catalog management (#6782)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies through company-scoped control-plane workflows. > - Agents need reusable, inspectable skills that can be installed, reset, audited, exported, and assigned without bespoke local setup. > - The existing skill truth model needed cleanup so bundled skills, optional catalog skills, runtime skills, and adapter-provided skills have clear provenance. > - Operators also need a practical CLI and board UI for discovering and managing company skills. > - This pull request adds the skills CLI, packaged skills catalog, company skills APIs, and catalog-aware board UI. > - The benefit is a more reusable Paperclip company setup where skills are portable, auditable, and easier for operators and agents to manage. ## What Changed - Added `paperclipai skills` CLI commands and coverage for catalog listing, installing, resetting, and inspecting company skills. - Added a packaged `@paperclipai/skills-catalog` workspace with bundled and optional skill content plus validation/build tests. - Added shared company-skill types and validators used across CLI, server, and UI contracts. - Added server catalog APIs/services for company skill catalog operations, reset semantics, audit behavior, and portability provenance. - Updated adapter skill handling so runtime/catalog provenance remains explicit across local adapters. - Added board UI support for browsing and managing catalog-backed company skills. - Updated docs for the skills CLI/catalog flow and the company skills Paperclip skill reference. - Rebased the branch onto current `paperclipai/paperclip:master`; no `pnpm-lock.yaml`, `.github/workflows`, or migration files are included in the final PR diff. ## Verification - Passed: `pnpm run preflight:workspace-links && pnpm exec vitest run cli/src/__tests__/skills.test.ts packages/skills-catalog/src/catalog-builder.test.ts packages/skills-catalog/src/shipped-catalog.test.ts packages/shared/src/validators/company-skill.test.ts packages/adapter-utils/src/server-utils.test.ts packages/plugins/create-paperclip-plugin/src/entrypoints.test.ts server/src/__tests__/company-skills-catalog-service.test.ts server/src/__tests__/company-skills-routes.test.ts server/src/__tests__/company-portability.test.ts`. - Passed: `pnpm exec vitest run server/src/__tests__/workspace-runtime.test.ts -t "default branch|origin/master|symbolic-ref"`. - Attempted: full `server/src/__tests__/workspace-runtime.test.ts`. Four provisioning tests failed while seeding an isolated worktree database from the local Paperclip instance because the local plugin schema dump contains a duplicate-column foreign key (`plugin_content_machine_18a7bc327b.content_case_signals`). The default-branch tests touched by the rebase conflict passed in the focused run above. - Checked final diff: no `pnpm-lock.yaml`, no `.github/workflows`, and no migration-file changes relative to `master`. ## Risks - Medium: this is a broad skills/catalog change touching CLI, server APIs, shared contracts, adapter skill sync, and UI. - Catalog validation and reset semantics need careful reviewer attention because they affect reusable company setup and portability. - No database migrations are included in this PR, so there is no migration ordering/idempotency risk in the final diff. - No lockfile is included by design; dependency resolution will be handled by the repository lockfile workflow. ## Model Used - OpenAI Codex coding agent based on GPT-5, running in Paperclip via the `codex_local` adapter with shell, git, GitHub CLI, and code-editing tool access. Exact hosted model build/context-window metadata is not exposed in this runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run targeted tests locally and documented the local workspace-runtime seed failure above - [x] I have added or updated tests where applicable - [x] If this change affects the UI, screenshots were intentionally omitted per PAP-10124 instructions; UI behavior is covered by tests and reviewer inspection - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>
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Dotta
@@ -638,6 +638,106 @@ describe("company portability", () => {
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expect(asTextFile(exported.files["skills/paperclipai/paperclip/paperclip/references/api.md"])).toContain("# API");
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});
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it("exports catalog skill provenance in portable Paperclip frontmatter", async () => {
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const portability = companyPortabilityService({} as any);
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const catalogKey = "paperclipai/bundled/software-development/review";
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const originHash = "sha256:catalog-origin";
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const catalogSkill = {
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id: "skill-catalog",
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companyId: "company-1",
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key: catalogKey,
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slug: "review",
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name: "review",
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description: "Catalog review skill",
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markdown: "---\nname: review\ndescription: Catalog review skill\n---\n\n# Review\n",
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sourceType: "catalog",
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sourceLocator: "/tmp/paperclip/catalog/review",
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sourceRef: originHash,
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trustLevel: "markdown_only",
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compatibility: "compatible",
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fileInventory: [
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{ path: "SKILL.md", kind: "skill" },
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{ path: "references/checklist.md", kind: "reference" },
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],
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metadata: {
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sourceKind: "catalog",
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skillKey: catalogKey,
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catalogId: "paperclipai:bundled:software-development:review",
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catalogKey,
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catalogKind: "bundled",
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catalogCategory: "software-development",
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catalogPath: "catalog/bundled/software-development/review",
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packageName: "@paperclipai/skills-catalog",
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packageVersion: "0.3.1",
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originHash,
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originVersion: "0.3.1",
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originSnapshotLocator: "/tmp/local-only-origin",
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installedHash: "sha256:installed",
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userModifiedAt: "2026-05-01T00:00:00.000Z",
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updateHoldReason: "local_modifications",
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auditVerdict: "warning",
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auditCodes: ["local_modifications"],
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auditScannedAt: "2026-05-02T00:00:00.000Z",
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auditScanVersion: "skills-audit-v1",
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},
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};
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companySkillSvc.listFull.mockResolvedValue([catalogSkill]);
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companySkillSvc.readFile.mockImplementation(async (_companyId: string, skillId: string, relativePath: string) => ({
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skillId,
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path: relativePath,
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kind: relativePath === "SKILL.md" ? "skill" : "reference",
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content: relativePath === "SKILL.md"
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? "---\nname: review\ndescription: Catalog review skill\n---\n\n# Review\n"
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: "# Checklist\n",
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language: "markdown",
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markdown: true,
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editable: true,
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}));
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const exported = await portability.exportBundle("company-1", {
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include: {
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company: false,
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agents: false,
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projects: false,
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issues: false,
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skills: true,
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},
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expandReferencedSkills: true,
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});
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const skillMarkdown = asTextFile(exported.files["skills/paperclipai/bundled/software-development/review/SKILL.md"]);
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expect(skillMarkdown).toContain("paperclip:");
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expect(skillMarkdown).toContain("catalog:");
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expect(skillMarkdown).toContain(`sourceRef: "${originHash}"`);
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expect(skillMarkdown).toContain('catalogId: "paperclipai:bundled:software-development:review"');
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expect(skillMarkdown).toContain(`catalogKey: "${catalogKey}"`);
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expect(skillMarkdown).toContain('catalogKind: "bundled"');
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expect(skillMarkdown).toContain('catalogPath: "catalog/bundled/software-development/review"');
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expect(skillMarkdown).toContain('packageName: "@paperclipai/skills-catalog"');
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expect(skillMarkdown).toContain('packageVersion: "0.3.1"');
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expect(skillMarkdown).toContain('installedHash: "sha256:installed"');
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expect(skillMarkdown).toContain('auditVerdict: "warning"');
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expect(skillMarkdown).not.toContain("originSnapshotLocator");
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expect(exported.manifest.skills[0]).toMatchObject({
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key: catalogKey,
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sourceType: "catalog",
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sourceRef: originHash,
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metadata: expect.objectContaining({
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sourceKind: "catalog",
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skillKey: catalogKey,
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originHash,
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catalogId: "paperclipai:bundled:software-development:review",
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catalogKey,
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catalogKind: "bundled",
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catalogPath: "catalog/bundled/software-development/review",
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packageName: "@paperclipai/skills-catalog",
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packageVersion: "0.3.1",
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installedHash: "sha256:installed",
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auditCodes: ["local_modifications"],
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}),
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});
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});
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it("exports only selected skills when skills filter is provided", async () => {
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const portability = companyPortabilityService({} as any);
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