23 Commits

Author	SHA1	Message	Date
Nicolás Rodrigues	f3db7b88ea	Clear stale checkoutRunId on run finalization and add backstop sweeper (#6008) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The issue subsystem holds per-row lock columns (`checkoutRunId`, `executionRunId`, `executionAgentNameKey`, `executionLockedAt`) that gate checkout, ownership, and release > - When a heartbeat run terminates, `releaseIssueExecutionAndPromote` clears the execution-lock columns but stale checkout locks could remain attached to dead runs in edge paths > - The original fix closed the finalization, checkout, release, and sweeper paths, but PR CI exposed one more process-loss retry path where a queued retry advanced `executionRunId` while leaving `checkoutRunId` pinned to the failed run > - This pull request closes the asymmetry: terminal-run cleanup and process-loss retry recovery release dead checkout locks while preserving live execution ownership > - The benefit is permanent, automatic self-heal of stale lock columns and fewer false checkout 409s requiring board intervention > - Related upstream issue: #6007 ## Linked Issues or Issue Description Refs #6007. Duplicate/related PR search performed on 2026-06-10 with query `checkoutRunId process loss retry stale checkout lock repo:paperclipai/paperclip`. Related PRs found and reviewed for overlap: - #7727 `fix(heartbeat): atomically advance checkoutRunId on process-loss retry` - #7707 `test: cover same-agent stale checkout adoption` - #3068 `fix: clear checkoutRunId when releasing issue execution lock` ## What Changed - `server/src/services/heartbeat.ts` `releaseIssueExecutionAndPromote`: extend the per-issue update to also null `checkoutRunId` when it matches the terminating run id. WHERE clause scoped to `executionRunId = run.id OR checkoutRunId = run.id` for idempotence. - `server/src/services/heartbeat.ts` process-loss retry: when queuing the retry run, move `executionRunId` to the retry and clear the failed run's `checkoutRunId` so the dead run no longer owns checkout. - `server/src/services/issues.ts`: add `clearCheckoutRunIfTerminal` helper, symmetric to `clearExecutionRunIfTerminal`. No assignee/status precondition. Wired into `checkout`, `assertCheckoutOwner`, and `release`. Exported on the issue service. - `server/src/services/recovery/service.ts`: add `sweepStaleIssueLocks`. Scans `issues` where `checkoutRunId IS NOT NULL OR executionRunId IS NOT NULL`, joins each referenced run, and clears all lock columns on issues whose referenced runs are all terminal or missing. Emits one `issue.stale_lock_cleared` activity log row per cleared issue. - `server/src/services/heartbeat.ts`: re-export the sweeper on the heartbeat facade. - `server/src/index.ts`: invoke `sweepStaleIssueLocks` in both the startup recovery sequence and the periodic heartbeat timer chain. - Tests: route-level coverage of the new self-heal path on the next checkout attempt, service-level sweeper coverage, and heartbeat recovery assertions that terminal process-loss cleanup releases `checkoutRunId`. ## Verification ```bash pnpm --filter @paperclipai/server typecheck pnpm --filter @paperclipai/server exec vitest run \ src/__tests__/recovery-stale-issue-lock-sweep.test.ts \ src/__tests__/issue-stale-execution-lock-routes.test.ts NODE_ENV=test pnpm exec vitest run src/__tests__/heartbeat-process-recovery.test.ts -t "queues exactly one retry when the recorded local pid is dead|does not block paused-tree work when immediate continuation recovery is suppressed by the hold" NODE_ENV=test pnpm exec vitest run src/__tests__/heartbeat-process-recovery.test.ts ``` All listed local checks pass. The new and updated tests cover: - Run termination clears `checkoutRunId` when it points at the terminating run. - Process-loss retry clears the failed run's `checkoutRunId` while assigning `executionRunId` to the queued retry. - A different agent calling `POST /api/issues/:id/checkout` on an issue whose prior owner died self-heals via `clearCheckoutRunIfTerminal` and succeeds. - Sweeper clears stale lock columns for issues whose run row is terminal. - Sweeper leaves issues alone while the referenced run is still running. - Sweeper leaves issues alone when `executionRunId` is still running even if `checkoutRunId` is terminal. - Sweeper is idempotent; second pass clears nothing. Manual reproduction of the original bug shape: 1. Create an issue assigned to agent A, set `status='in_progress'`, `checkoutRunId=R1`, `executionRunId=null`, where `heartbeat_runs.status = 'failed'` for `R1`. 2. Reassign to agent B and move to `status='todo'`. 3. Before this PR: agent B `POST /checkout` returns `409 Issue checkout conflict` indefinitely. After this PR: succeeds, lock columns rewritten to agent B's current run id. ## Risks - Low. All clears are scoped by run id, so they only fire when the lock column unambiguously points at the terminating or terminal run. No schema change. No migration. No API surface change. - Behavioral shift: an issue that previously stayed `in_progress` with a dead `checkoutRunId` after run termination now self-heals. Downstream code that reads stale `checkoutRunId` as a proxy for recent run history should already be reading `executionRunId` or the `heartbeat_runs` table. - Sweeper cost: one indexed scan per recovery tick over rows where `checkoutRunId IS NOT NULL OR executionRunId IS NOT NULL` plus a single batched `heartbeatRuns` lookup per candidate. Negligible at expected cardinality; further bounded by the existing recovery cadence. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. This is a bug fix, not a feature. No roadmap overlap. ## Model Used - Claude (Anthropic), model ID `claude-opus-4-7`, extended-thinking off, tool use enabled. - OpenAI Codex, GPT-5-based coding agent, tool use enabled, used for the follow-up process-loss retry fix and PR body update. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Dotta <bippadotta@protonmail.com>	2026-06-10 09:33:21 -05:00
Dotta	71a8464fee	[codex] prevent invalid agents from receiving assignments and runs (#7663) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The control plane owns agent lifecycle, issue assignment, routine dispatch, heartbeat wakeups, and recovery paths > - Terminated, paused, pending-approval, or otherwise invalid agents should not receive new work or new execution attempts > - The old behavior left eligibility checks spread across routes and services, so assignment and run paths could drift apart > - This pull request centralizes agent lifecycle eligibility and applies it consistently to assignment, invocation, routines, recovery, and UI affordances > - The benefit is safer autonomy: terminated agents stay paused, invalid org-chain agents are surfaced, and active agents keep receiving valid work ## Linked Issues or Issue Description Refs #5103 Related: #1864 Bug fix context: - What happened: agent assignment and heartbeat/run paths did not share one eligibility contract, so invalid lifecycle states could still be considered in some paths. - Expected behavior: terminated agents must never receive new assignments or heartbeat runs, and paused or otherwise invalid agents should be treated as non-invokable consistently. - Steps to reproduce: create or select an agent in an invalid lifecycle state, then attempt assignment, routine dispatch, or heartbeat/recovery wake paths. - Paperclip version/commit: fixed on top of `paperclipai/paperclip` `master` at the PR base. - Deployment mode: applies to the server control plane in local and authenticated deployments. ## What Changed - Added shared agent lifecycle eligibility helpers and exported the related shared types. - Centralized server-side assignability and invokability checks for issue assignment, agent routes, heartbeat dispatch, routines, recovery, and liveness logic. - Hardened issue assignment so invalid assignees are rejected instead of queued for work. - Hardened heartbeat/routine/recovery paths so terminated and otherwise invalid agents are not woken for new runs. - Updated board UI affordances to disable invalid agent actions and surface org-chain warnings where relevant. - Added targeted shared, server, and UI tests for the new eligibility behavior. ## Verification - `pnpm exec vitest run packages/shared/src/agent-eligibility.test.ts server/src/__tests__/agent-invokability.test.ts server/src/__tests__/heartbeat-archived-company-guard.test.ts server/src/__tests__/issue-liveness.test.ts server/src/__tests__/issues-service.test.ts server/src/__tests__/routines-service.test.ts ui/src/lib/company-members.test.ts ui/src/pages/Agents.test.tsx` — 8 files, 144 tests passed. - `pnpm --filter @paperclipai/shared typecheck && pnpm --filter @paperclipai/server typecheck && pnpm --filter @paperclipai/ui typecheck` — passed. - Checked the PR diff does not include `pnpm-lock.yaml` or `.github/workflows` changes. - Checked `ROADMAP.md`; this is a targeted control-plane safety fix and does not duplicate a planned core feature. - Searched GitHub for duplicate or related PRs/issues; closest related items are linked above. - CI and Greptile verification are pending on the opened PR and will be followed up before requesting merge. ## Risks Low to moderate risk. The intended behavioral shift is that invalid agents are refused earlier and more consistently, which could expose existing data with paused, pending, terminated, or broken org-chain assignees. The added tests cover the critical assignment, heartbeat, routine, recovery, shared helper, and UI paths. No database migrations are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI GPT-5 Codex via the Paperclip `codex_local` adapter, with shell/git/GitHub CLI tool use. Reasoning mode and context window are managed by the adapter runtime and not exposed in this environment. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots (not applicable: no design screenshots requested; UI behavior is covered by tests) - [x] I have updated relevant documentation to reflect my changes (not applicable: no user-facing command or schema docs changed) - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green (pending CI) - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups (pending Greptile) - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-06-06 12:45:57 -05:00
Dotta	7428fb956f	[codex] Guard git-sensitive adapter workspaces (#7644) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The affected subsystem is the heartbeat execution path that turns issue assignment into adapter-backed work in a selected workspace. > - PAP-10409 and sibling follow-ups failed before useful adapter output because project/workspace identity became incoherent. > - A project-workspace-linked child issue could keep `projectWorkspaceId` / execution workspace state while losing `projectId`, then a git-sensitive local adapter could fall through toward an invalid fallback cwd. > - Paperclip needs to treat coherent workspace identity as part of the live-path contract, not only as post-failure cleanup. > - This pull request documents that rule, repairs issue inheritance, and blocks git-sensitive adapter launch before it can run from the wrong cwd. > - The benefit is a bounded recovery path: affected issues are repaired explicitly, future malformed workspaces fail fast with a clear recovery action, and the UI surfaces that reason. ## Linked Issues or Issue Description Refs #7646 Bug report fields: - Summary: adapter-backed follow-up issues can fail before doing work when issue creation/inheritance preserves workspace ids but drops project identity. - Affected issues: internal Paperclip issues PAP-10408 through PAP-10412, especially PAP-10409. - Steps to reproduce: create a project-scoped parent/follow-up tree where a child issue keeps `projectWorkspaceId` or an inherited execution workspace but has `projectId: null`, then launch a git-sensitive local adapter such as `codex_local`. - Expected behavior: Paperclip derives or preserves coherent project identity during issue creation, and heartbeat refuses malformed git-sensitive workspace launches with one clear recovery action. - Actual behavior before this PR: the run could reach adapter bootstrap with an incoherent workspace context and fail with git errors such as `fatal: not a git repository (or any parent up to mount point /srv)`. - Root cause: child/follow-up issue inheritance preserved workspace execution context without coherent project context. That let heartbeat workspace resolution/adapter launch reach a fallback cwd instead of refusing the malformed workspace state up front. ## What Changed - Documented the adapter workspace-coherence live-path precondition in `doc/execution-semantics.md`. - Updated issue creation/inheritance so workspace-inheriting issues preserve or derive project identity, while existing mismatch validation still rejects incoherent project/workspace combinations. - Added a heartbeat preflight guard for git-sensitive local adapters that validates effective cwd, persisted workspace identity, project workspace identity, and required git metadata before launch. - Added `workspace_validation` recovery actions for this failure class and ensured the source issue gets a visible, idempotent recovery comment. - Surfaced workspace-validation recovery state in issue rows, blocked notices, and recovery action cards, including the manual-repair wake policy label. - Added focused regression coverage for issue inheritance, all heartbeat workspace-validation guard branches, recovery display helpers, and UI recovery components. ## Verification - `pnpm exec vitest run server/src/__tests__/heartbeat-workspace-session.test.ts` - Result: 1 test file passed, 68 tests passed. - `pnpm exec vitest run ui/src/components/IssueRecoveryActionCard.test.tsx` - Result: 1 test file passed, 12 tests passed. - `pnpm exec vitest run ui/src/components/IssueBlockedNotice.test.tsx ui/src/components/IssueRecoveryActionCard.test.tsx` - Result: 2 test files passed, 18 tests passed. - `pnpm --filter @paperclipai/ui typecheck` - Result: passed. - `pnpm exec vitest run server/src/__tests__/heartbeat-plugin-environment.test.ts server/src/__tests__/issues-service.test.ts server/src/__tests__/heartbeat-workspace-session.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts ui/src/components/IssueBlockedNotice.test.tsx ui/src/components/IssueRecoveryActionCard.test.tsx ui/src/lib/recovery-display.test.ts` - Result: 7 test files passed, 200 tests passed before the final guard-branch additions; the changed server file was re-run above. - UI coverage: `ui/storybook/stories/source-issue-recovery.stories.tsx` contains rendered scenarios for the generic recovery chip, workspace-validation recovery chip, blocked notice indicator, recovery action card, and issue-row chip. - Screenshot capture attempt: Storybook started successfully on `http://127.0.0.1:6016/`, but screenshots could not be captured in this runner because `agent-browser` launched an unusable Chrome binary and Playwright Chromium failed on missing system library `libatk-1.0.so.0`; the runner is non-root and lacks passwordless sudo for installing browser dependencies. - Hosted CI on final commit `969594e7` is green, including `verify`, `Build`, `Typecheck + Release Registry`, `General tests (server)`, workspace suites, serialized server suites, `Canary Dry Run`, and `e2e`. - Roadmap checked: no duplicate roadmap item; this is a tightly scoped reliability fix for existing heartbeat/workspace behavior. - Duplicate PR search checked: no open PR matched `workspace coherence adapter cwd`. ## Risks - Medium risk: heartbeat launch is stricter for git-sensitive local adapters and can now block malformed workspace states before adapter execution. - Mitigation: the guard is limited to local git-sensitive adapters and records a source-scoped recovery action with structured evidence instead of retrying indefinitely. - Compatibility: valid project/workspace execution paths continue normally; explicit project/workspace mismatches remain rejected. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, GPT-5-based `codex_local` coding agent with terminal/tool use. Work was produced through Paperclip issue execution with focused local test runs. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-06-06 09:39:26 -05:00
Devin Foley	911a1e8b0d	Fix continuation recovery retry streaks by failure cause (#7031) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The recovery subsystem is responsible for keeping assigned work moving when a live heartbeat run disappears or fails. > - `continuation_recovery` is the path that re-enqueues stranded `in_progress` issues after an interrupted continuation attempt. > - That path recently gained cause-aware retry classes and transient retry caps, but the streak counter was still aggregating mixed failure causes into one retry history. > - That meant a sequence like `timeout -> timeout -> adapter_failed -> adapter_failed` could escalate as a false `3x adapter_failed` streak even though the latest cause had only happened twice. > - This pull request makes continuation retry streaks count only consecutive failures whose `errorCode` matches the latest run and adds a regression test for the mixed-cause case. > - The benefit is that transient retry backoff and escalation now match the actual current failure cause instead of inheriting stale budget from unrelated failures. ## What Changed - Updated `summarizeRecentContinuationRetries(...)` to stop counting as soon as the continuation failure cause no longer matches the latest run's `errorCode`. - Wired the continuation recovery escalation/backoff path to pass the latest classified `errorCode` into the retry streak summarizer. - Added a regression test proving mixed-cause continuation failures do not consume the transient retry cap for a new failure cause. ## Verification - `pnpm exec vitest run server/src/__tests__/heartbeat-process-recovery.test.ts` ## Risks - Low risk. The behavioral change is intentionally narrow, but any future continuation retry modes that rely on `errorCode = null` will now be counted as a separate streak bucket and should be kept in mind when adding new retry classifications. ## Model Used - OpenAI Codex via Paperclip `codex_local` (GPT-5-based Codex coding agent; exact backend revision is not surfaced in the runtime), with tool use, shell execution, and patch application in the local repository. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-29 19:48:59 -07:00
Dotta	b7545823be	[codex] Add document annotations and comments (#6733) ... ## Thinking Path > - Paperclip orchestrates AI-agent companies through issues, documents, runs, and durable company-scoped state. > - Issue documents are where agents and operators capture plans, handoffs, and work products. > - Before this change, document collaboration could only happen through whole-document edits and detached issue comments. > - Inline document annotations need stable anchors, revision-aware persistence, and UI affordances that do not break existing document editing. > - This pull request adds company-scoped document annotation threads, comments, anchor snapshots, API routes, and board UI. > - The benefit is that operators and agents can discuss specific document passages without losing context as documents evolve. ## What Changed - Added document annotation tables, schema exports, shared types, validators, anchor hashing, and text-anchor helpers. - Added server-side document annotation services and issue routes for listing, creating, commenting, resolving, and reopening annotation threads. - Included annotation summaries in relevant issue document reads and backup/recovery document workspace behavior. - Added React UI for inline document highlights, comment panels, mobile sheet behavior, deep-link focus, and resolved/open filtering. - Added annotation design artifacts, Storybook coverage, screenshots, and a screenshot helper script. - Rebased the branch onto current `paperclipai/paperclip` `master` and renumbered the annotation migration from `0085_old_swarm` to `0091_old_swarm`; the SQL uses `IF NOT EXISTS` guards so environments that previously applied the old migration number can safely apply the new one. - Adjusted the new annotation UI tests to use a local async flush helper because this workspace's React 19.2.4 export does not expose `React.act`. ## Verification - `pnpm run preflight:workspace-links && pnpm exec vitest run packages/shared/src/document-anchors.test.ts server/src/__tests__/document-annotation-routes.test.ts server/src/__tests__/document-annotations-service.test.ts ui/src/components/DocumentAnnotationLayer.test.tsx ui/src/components/IssueDocumentAnnotations.test.tsx ui/src/lib/document-annotation-hash.test.ts ui/src/lib/document-annotation-selection.test.ts` - Confirmed `git diff --check` passes. - Confirmed no `pnpm-lock.yaml` or `.github/workflows/*` files are included in the PR diff. ## Risks - Medium risk: this adds new persisted annotation tables and routes across db/shared/server/ui. - Migration risk is reduced by moving the branch migration to `0091_old_swarm` after upstream `0090_resource_memberships` and keeping the SQL idempotent for old `0085_old_swarm` adopters. - UI risk is mostly around text range anchoring and panel positioning across long documents, folded content, and mobile layouts; the PR includes focused unit coverage and design screenshots. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent, tool-using software engineering mode. Context window size is not exposed in this Paperclip runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-26 06:41:23 -07:00
Dotta	bfe6369ef5	Guard cheap recovery model usage (#6371) ... ## Thinking Path > - Paperclip is the control plane that coordinates AI-agent work through issues, heartbeats, comments, approvals, and auditable recovery paths. > - The affected subsystem is heartbeat/recovery orchestration, especially the optional cheap model profile used for operational recovery overhead. > - Cheap recovery should repair status and liveness, but it must not become the worker lane that writes deliverables, continues source work, or propagates cheap execution hints into downstream retries. > - The gap was that cheap-profile hints could follow recovery wake contexts and assignment overrides farther than intended, making real work eligible to run on the cheap model. > - This pull request separates status-only cheap recovery from normal source-work continuations, adds route guards for deliverable mutations during cheap status-only runs, and documents the invariant. > - The benefit is safer retry/recovery behavior: cheap runs can clean up control-plane state, while any remaining source work resumes through a normal/original model path. ## What Changed - Added recovery model-profile work classes so status-only recovery carries explicit guard context and normal-model continuations scrub cheap hints. - Updated heartbeat, productivity review, liveness continuation, and recovery service wakeups to request cheap only for bounded status-only recovery work. - Blocked cheap status-only recovery runs from writing issue documents, plans, attachments, work products, or assigning downstream work back to `modelProfile: "cheap"`. - Added/updated server tests for cheap profile propagation, artifact/document guards, route authorization, retry scheduling, and successful-run handoff behavior. - Documented the recovery model-profile lane in `doc/SPEC-implementation.md` and `doc/execution-semantics.md`. - After rebasing onto current `public-gh/master`, stabilized the new `InstanceSidebar` plugin-filter tests so the PR check lane stays green. ## Verification - Local: `pnpm exec vitest run --config vitest.config.ts src/services/recovery/model-profile-hint.test.ts src/__tests__/issue-agent-mutation-ownership-routes.test.ts src/__tests__/issue-document-restore-routes.test.ts` from `server/` - 3 files, 37 tests passed after final edits. - Local: `pnpm exec vitest run --config vitest.config.ts src/__tests__/heartbeat-process-recovery.test.ts` from `server/` - 44 tests passed after rerunning the cleanup-sensitive file alone. - Local: `pnpm --filter @paperclipai/ui exec vitest run src/components/InstanceSidebar.test.tsx` - 4 tests passed. - Local: `pnpm --filter @paperclipai/server typecheck` - passed. - Local: `pnpm --filter @paperclipai/ui typecheck` - passed. - PR checks on latest head `6f8c3b1380f5bd872c6f49f6f7188ecf3bb6d263` - all green, including `verify`, build, typecheck, server/general/serialized tests, e2e, Snyk, and policy. - Greptile: pass 3 returned Confidence Score 5/5 with zero unresolved Greptile review threads. ## Risks - Medium risk: recovery behavior is intentionally stricter, so any path that incorrectly relies on cheap recovery to keep doing source work will now need to hand back to a normal-model run. - Low migration risk: no schema changes. - No product UI changes; the UI file touched is a test-only stabilization after rebasing onto current `master`. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent, GPT-5 model family (`gpt-5`), tool use and local code execution enabled; context window not exposed in this environment. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots (N/A: no product UI changes) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-05-19 13:46:02 -05:00
Dotta	5071c4c776	[codex] Add workspace diff viewer plugin (#6071) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Operators need to inspect what agents changed inside execution and project workspaces. > - The existing workspace detail views did not provide a first-party rich diff surface for staged, unstaged, head, renamed, binary, oversized, and untracked changes. > - The plugin system is the intended extension point for optional rich UI surfaces. > - This pull request adds a workspace diff plugin plus host services and shared contracts so Changes tabs can render workspace diffs through plugin slots. > - The diff-renderer dependency should stay owned by the plugin package rather than the core UI app. > - The dependency surface must stay aligned with repository PR policy, including intentionally omitting `pnpm-lock.yaml` from the PR. > - The benefit is a more reviewable workspace surface without hard-coding the renderer into every page. ## What Changed - Added `@paperclipai/plugin-workspace-diff`, including diff normalization, plugin manifest/worker/UI entrypoints, and focused plugin tests. - Kept `@pierre/diffs` scoped to `@paperclipai/plugin-workspace-diff`; removed the core UI lab diff-renderer surface and direct UI package dependency. - Added shared workspace diff types and validators, plus plugin SDK surface for workspace diff host services. - Added server workspace diff service support and route coverage for execution/project workspace diff flows. - Wired Execution Workspace and Project Workspace Changes tabs to load the diff plugin, including loading/error fallback behavior. - Added UI tests and fixtures for the Changes tabs and plugin bridge behavior. - Added the new plugin package manifest to the Docker deps stage so PR policy can validate dependency coverage. - Addressed review hardening around empty untracked patches, workspace path exposure, project workspace read capability checks, and default base refs. ## Verification - `pnpm --filter @paperclipai/plugin-workspace-diff test` - `pnpm exec vitest run packages/shared/src/validators/workspace-diff.test.ts server/src/__tests__/workspace-diff-service.test.ts ui/src/pages/ProjectWorkspaceDetail.test.tsx ui/src/pages/ExecutionWorkspaceDetail.test.tsx` - `pnpm exec vitest run ui/src/plugins/bridge.test.ts server/src/__tests__/workspace-runtime-routes-authz.test.ts` - `pnpm --filter @paperclipai/shared typecheck` - `pnpm --filter @paperclipai/plugin-workspace-diff typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` - `node ./scripts/check-docker-deps-stage.mjs` - Browser screenshot captured from the local worktree dev server: https://files.catbox.moe/ofdpsp.png - Confirmed branch is rebased onto `public-gh/master`, `.github/workflows/pr.yml` is not included in the PR diff, `ui/package.json` is not included in the PR diff, and `pnpm-lock.yaml` is not included in the PR diff. ## Risks - Medium UI integration risk: the Changes tab depends on the plugin slot and host diff service path. - Medium dependency risk: this adds `@pierre/diffs` in the plugin package, but `pnpm-lock.yaml` is intentionally omitted per packaging instructions because repository automation manages lockfile updates. - Current CI blocker: downstream frozen installs fail until the repository policy path for new plugin package dependencies is chosen. - Diff rendering edge cases are covered for common working-tree and head diff states, but very large repositories may still expose performance limits. - No migrations are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 class coding model, tool-enabled local execution environment. Exact context window was not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-18 08:50:06 -05:00
Dotta	d734bd43d1	[codex] Roll up May 17 branch changes (#6210) ... ## Thinking Path > - Paperclip is the control plane for autonomous AI companies, so agent work needs visible ownership, recovery, and operator controls. > - This local branch had accumulated several related control-plane reliability and operator-experience fixes across recovery actions, watchdog folding, model-profile defaults, mentions, markdown editing, plugin launchers, and small UI polish. > - The branch needed to be converted into a PR against the current `origin/master` without losing dirty work or including lockfile/workflow churn. > - The safest standalone shape is a single rollup PR because the recovery/server/UI files overlap heavily across the local commits and splitting would create avoidable conflicts. > - This pull request replays the local branch onto latest `origin/master`, preserves the uncommitted work as logical commits, and adds a Zod 4 validator compatibility fix found during verification. > - The benefit is that the May 17 local branch can be reviewed and merged as one coherent, conflict-free branch under the 100-file Greptile limit. ## What Changed - Rebased the local May 17 branch work onto current `origin/master` in a dedicated worktree. - Preserved and committed previously dirty changes for recovery retry handling, plugin/sidebar launcher polish, and `.herenow` ignores. - Added recovery-action behavior for returning source issues to `todo` when retrying source-scoped recovery. - Included the existing local recovery/liveness/watchdog fold, Codex cheap-profile, markdown/mention, duplicate-agent, and UI polish commits from the branch. - Normalized shared validator `z.record(...)` schemas to explicit string-key records for Zod 4 compatibility. - Confirmed the PR has no `pnpm-lock.yaml` or `.github/workflows/*` changes and stays below the 100-file Greptile limit. ## Verification - `pnpm install --frozen-lockfile --ignore-scripts` - `npm run install` in `node_modules/.pnpm/sqlite3@5.1.7/node_modules/sqlite3` to build the local native sqlite3 binding after installing with scripts disabled - `pnpm exec vitest run packages/shared/src/validators/issue.test.ts packages/shared/src/project-mentions.test.ts packages/adapter-utils/src/server-utils.test.ts server/src/__tests__/heartbeat-model-profile.test.ts server/src/__tests__/issue-recovery-actions.test.ts server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts server/src/__tests__/plugin-local-folders.test.ts ui/src/components/IssueRecoveryActionCard.test.tsx ui/src/components/Sidebar.test.tsx ui/src/components/SidebarAccountMenu.test.tsx ui/src/components/IssueProperties.test.tsx ui/src/components/MarkdownEditor.test.tsx ui/src/components/MarkdownBody.test.tsx ui/src/lib/duplicate-agent-payload.test.ts ui/src/pages/Routines.test.tsx` - First pass: 13 files passed with 201 passing tests; 3 server files failed before sqlite3 native binding was built. - After rebuilding sqlite3: `server/src/__tests__/heartbeat-model-profile.test.ts`, `server/src/__tests__/issue-recovery-actions.test.ts`, and `server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts` passed/loaded; embedded Postgres tests were skipped by the local host guard. - `pnpm --filter @paperclipai/shared typecheck` - `pnpm --filter @paperclipai/adapter-utils typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` ## Risks - Medium risk: this is a broad rollup PR across recovery semantics, server tests, shared validators, and UI surfaces. - Some embedded Postgres tests skipped locally due the host guard, so CI should provide the stronger database-backed signal. - UI changes were covered by component tests, but no browser screenshot was captured in this PR creation pass. - This branch may overlap with existing recovery/liveness PR work; merge this PR independently or restack/close overlapping branches rather than merging duplicate implementations together. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent, tool-enabled local repository and GitHub workflow, medium reasoning effort. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-17 17:15:06 -05:00
Dotta	0808b388ee	[codex] Add source-scoped recovery actions (#5599) ... ## Thinking Path > - Paperclip is a control plane for autonomous AI companies, where work must end with a clear disposition rather than ambiguous agent liveness. > - Recovery currently detects stalled or missing-next-step issues, but source issue recovery can become split across child recovery issues, blockers, and comments. > - That makes it harder for operators and agents to see who owns recovery and what exact action is needed on the original issue. > - Source-scoped recovery actions give the original issue a first-class active recovery state with owner, evidence, wake policy, and resolution outcome. > - This pull request adds the recovery-action data model, backend reconciliation and resolution APIs, and board UI indicators/actions. > - The benefit is clearer stalled-work recovery without losing source issue context or relying on comments as the liveness path. ## What Changed - Added the `issue_recovery_actions` schema, shared types/constants/validators, and an idempotent `0084_issue_recovery_actions` migration ordered after current `master` migrations. - Updated stranded/missing-disposition recovery to create source-scoped recovery actions, wake the recovery owner on the source issue, and avoid locking the source issue for recovery-action wakes. - Added API support for reading active recovery actions on issue detail/list surfaces and resolving them with restored, blocked, cancelled, or false-positive outcomes. - Require blocked recovery resolutions to have an unresolved first-class blocker, and removed the UI shortcut that could mark recovery blocked without a blocker selection path. - Surfaced recovery indicators/actions in the issue UI, blocker notices, active run panels, issue rows, and Storybook coverage. - Updated docs and focused tests for recovery semantics, ownership, races, stale comments, and UI behavior. ## Verification - `pnpm exec vitest run server/src/__tests__/issue-recovery-actions.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts ui/src/components/IssueRecoveryActionCard.test.tsx ui/src/components/IssueBlockedNotice.test.tsx ui/src/api/issues.test.ts` — 5 files, 72 tests passed. - `pnpm --filter @paperclipai/shared typecheck` — passed. - `pnpm --filter @paperclipai/db typecheck` — passed, including migration numbering check. - `pnpm --filter @paperclipai/server typecheck` — passed. - `pnpm --filter @paperclipai/ui typecheck` — passed. - Follow-up verification after blocker-resolution guard: `pnpm exec vitest run server/src/__tests__/issue-recovery-actions.test.ts ui/src/components/IssueRecoveryActionCard.test.tsx ui/src/api/issues.test.ts` — 3 files, 27 tests passed. - Follow-up `pnpm --filter @paperclipai/server typecheck` — passed. - Follow-up `pnpm --filter @paperclipai/ui typecheck` — passed. - UI states are available in `ui/storybook/stories/source-issue-recovery.stories.tsx`; screenshot capture helper is `scripts/screenshot-recovery-card.cjs`. ## Risks - Medium: recovery behavior changes from child recovery issue ownership toward source-scoped actions, so operators may see stalled-work state in new places. - Migration risk is mitigated by using the next migration slot after `master` and making the table/constraints/index creation idempotent for anyone who previously applied the old branch-local `0082_dizzy_master_mold` migration. - Existing child recovery issue paths are still guarded for already-created recovery issues, but new source-scoped flows should be watched in CI and Greptile review. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent, tool use enabled for shell, Git, GitHub, and local test execution. Context window not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-12 09:37:15 -05:00
Devin Foley	a72731f118	fix: harden release registry verification against npm lag (#4816) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Its release automation publishes canary packages to npm and then validates the published registry state before considering the release healthy > - The failing canary run `25139465018` showed that npm can expose a newly published version through version-specific endpoints before the root package document has fully converged > - That made a successful canary publish look like a failed release because the verifier trusted stale root metadata too early > - This pull request hardens the registry verification path by preferring version-specific manifest checks, retrying convergence-sensitive failures, and distinguishing permanent failures from propagation lag > - While validating that change in CI, a separate teardown race in `heartbeat-stale-queue-invalidation.test.ts` surfaced and was hardened so the PR could pass reliably > - The benefit is that transient npm propagation lag no longer fails a successful canary publish, while genuine registry-state and dependency-integrity failures still stop the release flow promptly ## What Changed - Hardened `scripts/verify-release-registry-state.mjs` so it prefers version-specific manifest resolution over stale root metadata, adds bounded registry-fetch timeouts, and classifies failures as retriable vs non-retriable. - Updated `scripts/release-lib.sh` and `scripts/release.sh` so post-publish registry verification retries only convergence-sensitive failures and reports immediate permanent failures clearly. - Expanded `scripts/verify-release-registry-state.test.mjs` with regression coverage for stale root metadata, fetch timeout behavior, peer dependency range handling, non-retriable canary-latest cases, and related verifier edge cases. - Hardened `server/src/__tests__/heartbeat-stale-queue-invalidation.test.ts` teardown to tolerate the late-comment foreign-key race that CI exposed while validating this branch. ## Verification - `pnpm run test:release-registry` - `node --check scripts/verify-release-registry-state.mjs` - `bash -n scripts/release.sh && bash -n scripts/release-lib.sh` - PR checks passed on head `5c422600fc12acac61f6b7c267a4dc915df622b1`: `policy`, `verify`, `e2e`, `security/snyk`, and `Greptile Review` ## Risks - Low risk. The main behavioral changes are limited to release automation and verifier retry semantics, plus a test-only teardown hardening for a CI race. > I checked [`ROADMAP.md`](ROADMAP.md). This is a narrow release bugfix and does not overlap planned core feature work. ## Model Used - OpenAI Codex via Paperclip `codex_local` with tool use and local code execution enabled. This agent session runs on a GPT-5-class coding model; the exact backend model ID/context window is not exposed by the local adapter runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I have addressed all Greptile and reviewer comments before requesting merge	2026-05-09 22:18:12 -07:00
Dotta	778e775c35	Add secrets provider vaults and remote import (#5429) ... ## Thinking Path > - Paperclip orchestrates AI-agent companies and needs secrets handling to work across local development, hosted operators, and governed agent execution. > - The affected subsystem is the company-scoped secrets control plane: database schema, server services/routes, CLI workflows, and the Secrets settings UI. > - The gap was that secrets were local-only and operators could not manage provider vaults or import existing remote references without exposing plaintext. > - This branch adds provider vault configuration plus an AWS Secrets Manager remote-import path while preserving company boundaries, binding context, and audit trails. > - I kept the PR to a single branch PR, removed unrelated lockfile/package drift, rebased the full branch onto the current `public-gh/master`, and addressed fresh Greptile findings. > - The benefit is a reviewable implementation of provider-backed secrets with focused tests covering provider selection, import conflicts, deleted secret reuse, rotation guards, and AWS signing behavior. ## What Changed - Added provider vault support for company secrets, including provider config storage, default vault handling, health checks, binding usage, access events, and remote import preview/commit. - Added an AWS Secrets Manager provider using SigV4 request signing, bounded request timeouts, namespace guardrails, cached runtime credential resolution, and external-reference linking without plaintext reads. - Added Secrets UI surfaces for vault management and remote import, plus CLI/API documentation for setup and operations. - Stabilized routine webhook secret binding paths and SSH environment-driver fixture bindings discovered during verification. - Addressed Greptile and CI findings: no lockfile/package drift, monotonic migration metadata, disabled-vault default races, soft-deleted secret hiding/recreate behavior, remove behavior with disabled vaults, soft-deleted external-reference re-import, non-active rotation guards, managed-secret soft deletion through PATCH, and per-call AWS SDK credential client churn. - Rebased this branch onto `public-gh/master` at `0e1a5828` and force-pushed with lease to keep this as the single PR for the branch. ## Verification - `git fetch public-gh master` - `git rebase public-gh/master` - `git diff --name-only public-gh/master...HEAD | grep '^pnpm-lock\.yaml$' || true` confirmed `pnpm-lock.yaml` is not in the PR diff. - Confirmed migration ordering: master ends at `0081_optimal_dormammu`; this PR adds `0082_dry_vision` and `0083_company_secret_provider_configs`. - Inspected migrations for repeat safety: new tables/indexes use `IF NOT EXISTS`; foreign keys are guarded by `DO $$ ... IF NOT EXISTS`; column additions use `ADD COLUMN IF NOT EXISTS`. - `pnpm -r typecheck` passed before the Greptile follow-up commits. - `pnpm test:run` ran the full stable Vitest path before the Greptile follow-up commits; it completed with 3 timing-related failures under parallel load: `codex-local-execute.test.ts`, `cursor-local-execute.test.ts`, and `environment-service.test.ts`. - `pnpm --filter @paperclipai/server exec vitest run src/__tests__/codex-local-execute.test.ts src/__tests__/cursor-local-execute.test.ts src/__tests__/environment-service.test.ts` passed on targeted rerun (`24/24`). - `pnpm build` passed before the Greptile follow-up commits. Vite reported existing chunk-size/dynamic-import warnings. - After Greptile follow-up commits: `pnpm --filter @paperclipai/server exec vitest run src/__tests__/secrets-service.test.ts` passed (`26/26`). - After Greptile follow-up commits: `pnpm --filter @paperclipai/server exec vitest run src/__tests__/aws-secrets-manager-provider.test.ts src/__tests__/secrets-service.test.ts` passed (`39/39`). - After Greptile follow-up commits: `pnpm --filter @paperclipai/server typecheck` passed. - Captured Storybook screenshots from `ui/storybook-static` for visual review. - Latest PR checks on `5ca3a5cf`: `policy`, serialized server suites 1/4-4/4, `Canary Dry Run`, `e2e`, `security/snyk`, and `Greptile Review` pass; aggregate `verify` is still registering the completed child checks. - Greptile review loop continued through the latest requested pass; all Greptile review threads are resolved and the latest `Greptile Review` check on `5ca3a5cf` passed with 0 comments added. ## Screenshots Before: the provider-vault and remote-import surfaces did not exist on `master`; these are after-state screenshots from the Storybook fixtures.    ## Risks - Migration risk: this adds new secret provider tables and extends existing secret rows. The migrations were checked for monotonic ordering and idempotent guards, but reviewers should still inspect upgrade behavior carefully. - Provider risk: AWS support uses direct SigV4 requests. Automated tests cover signing, request timeouts, vault-config selection, namespace guardrails, pending-version archival, sanitized provider errors, and service-level cleanup paths. A real-vault AWS smoke test remains deployment validation for an operator with AWS credentials rather than an unverified merge blocker in this local branch. - UI risk: the Secrets page and import dialog are large new surfaces; screenshots are included above for reviewer inspection. - Verification risk: the full local stable test command hit parallel-load timing failures, although the exact failed files passed when rerun directly. - Operational risk: remote import intentionally avoids plaintext reads; operators must understand that imported external references resolve at runtime and may fail if AWS permissions change. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent with local shell/tool use in the Paperclip worktree. Exact context-window size was not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>	2026-05-09 18:22:17 -05:00
Dotta	e400315cbf	Guard assigned backlog liveness (#5428) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The issue graph and liveness recovery system decide whether assigned work is executable or parked > - Assigned issues created without an explicit status could silently land in backlog, making parents look blocked with no productive wake path > - The server, shared validators, recovery analysis, and UI all need to agree on that execution semantic > - This pull request makes assigned issue creation default to `todo`, flags assigned backlog blockers, and surfaces the state in the board > - The benefit is that parked assigned work becomes intentional and visible instead of creating silent liveness stalls ## What Changed - Adds contract tests for assigned issue creation defaults. - Defaults assigned issue creation to `todo` when status is omitted while preserving explicit `backlog` parking. - Exposes `resolveCreateIssueStatusDefault` through shared validators. - Teaches liveness/blocker attention paths to distinguish assigned backlog blockers. - Adds UI notices, row/header badges, and issue detail safeguards for assigned backlog blockers. - Adds Storybook fixtures and execution-semantics documentation for the assigned-backlog behavior. ## Verification - `pnpm run preflight:workspace-links && pnpm exec vitest run packages/shared/src/validators/issue.test.ts server/src/__tests__/issue-assigned-backlog-contract-routes.test.ts server/src/__tests__/issue-blocker-attention.test.ts server/src/__tests__/issue-liveness.test.ts server/src/__tests__/heartbeat-issue-liveness-escalation.test.ts ui/src/components/IssueAssignedBacklogNotice.test.tsx ui/src/components/IssueRow.test.tsx` — 50 passed, 23 skipped. - Skipped tests were embedded Postgres suites on this host with the repo skip message: `Postgres init script exited with code null. Please check the logs for extra info. The data directory might already exist.` - Pairwise merge check against the issue-controls PR branch completed without conflicts via `git merge --no-commit --no-ff` in a temporary worktree. - Screenshots for assigned-backlog UI states: [light](docs/pr-screenshots/pr-5428/assigned-backlog-light.png), [dark](docs/pr-screenshots/pr-5428/assigned-backlog-dark.png). - Follow-up checks: `pnpm --filter /ui typecheck`; `pnpm --filter /mcp-server build`; `pnpm --filter /mcp-server test`; `pnpm exec vitest run packages/shared/src/validators/issue.test.ts`; focused UI component tests. - Remote PR checks on head `6300b3c`: policy, verify, serialized server shards 1/4-4/4, Canary Dry Run, e2e, Greptile Review, and Snyk all passed. ## Risks - Medium: changes status defaulting for assigned issue creation when the caller omits status. Explicit `backlog` remains supported, and server/shared tests cover both paths. - Medium: liveness classification changes can affect blocker attention labels; focused service and UI tests cover the new assigned-backlog state. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent, GPT-5 model family (`gpt-5`), tool-enabled Paperclip heartbeat environment. Context window and internal reasoning mode are not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-07 12:25:26 -05:00
Dotta	454edfe81e	Add recovery handoff system notices (#5289) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Agent runs can end productively while the source issue still lacks a durable final disposition. > - That leaves the control plane unsure whether to resume, escalate, or close the work. > - Issue comments also need a presentation contract so system-authored recovery notices can render as first-class thread messages without overloading normal comments. > - This pull request adds successful-run handoff recovery, comment presentation metadata, and system notice rendering. > - The benefit is stricter task liveness with clearer operator-facing recovery state. ## What Changed - Added successful-run handoff decisions, wake payloads, escalation behavior, and recovery tests. - Added issue comment presentation metadata with migration `0078_white_darwin.sql` and shared/server/company portability support. - Rendered recovery/system notices in issue chat with dedicated UI components, fixtures, tests, and storybook/lab coverage. - Included the current recovery model-profile hint patch so automatic recovery follow-ups use the cheap profile. ## Verification - `pnpm install --frozen-lockfile` - `pnpm exec vitest run server/src/services/recovery/successful-run-handoff.test.ts ui/src/components/SystemNotice.test.tsx ui/src/lib/system-notice-comment.test.ts ui/src/components/IssueChatThreadSystemNotice.test.tsx` ## Risks - Migration-bearing PR: merge this before any other branch that might later add a migration. - The branch touches both recovery services and issue-thread rendering, so review should pay attention to recovery wake idempotency and comment metadata compatibility. ## Model Used - OpenAI GPT-5 Codex via Paperclip `codex_local` adapter, with shell/git/GitHub CLI tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-06 06:05:58 -05:00
Dotta	57229d0f24	[codex] Add issue monitor liveness controls (#4988) ... ## Thinking Path > - Paperclip is a control plane for autonomous AI companies where work must stay observable, governable, and recoverable. > - The task/heartbeat subsystem owns agent execution continuity, issue state transitions, and visible recovery behavior. > - Waiting on an external service is not the same as being blocked when the assignee still owns a future check. > - The gap was that agents had no first-class one-shot monitor state for external-service waits, so recovery could look stalled or require ad hoc comments. > - This pull request adds bounded issue monitors that can wake the owner, clear exhausted waits, and produce explicit recovery behavior. > - It also surfaces monitor status in the board UI and documents when to use monitors versus `blocked`. > - The benefit is clearer liveness semantics for asynchronous waits without weakening single-assignee task ownership. ## What Changed - Added issue monitor fields, shared types, validators, constants, and an idempotent `0075` migration for scheduled monitor state. - Added server-side monitor scheduling, dispatch, recovery bounds, activity logging, and external-ref redaction. - Added board/agent route coverage for monitor permissions and child monitor scheduling. - Added issue detail/property UI for monitor state, a monitor activity card, and Storybook stories for review surfaces. - Documented monitor semantics and recovery policy behavior in `doc/execution-semantics.md`. - Addressed Greptile review feedback by preserving monitor state in skipped-stage builders and making board monitor saves send `scheduledBy: "board"`. ## Verification - `pnpm install --frozen-lockfile` - `pnpm run preflight:workspace-links && pnpm exec vitest run server/src/__tests__/issue-execution-policy-routes.test.ts server/src/__tests__/issue-execution-policy.test.ts server/src/__tests__/issue-monitor-scheduler.test.ts server/src/__tests__/recovery-classifiers.test.ts ui/src/components/IssueMonitorActivityCard.test.tsx ui/src/components/IssueProperties.test.tsx ui/src/lib/activity-format.test.ts` - First run passed 5 files and failed to collect 2 server suites because the worktree was missing the optional `acpx/runtime` dependency. - After `pnpm install --frozen-lockfile`, reran the 2 failed suites successfully. - `pnpm exec vitest run server/src/__tests__/issue-monitor-scheduler.test.ts server/src/__tests__/recovery-classifiers.test.ts` - `pnpm --filter @paperclipai/shared typecheck && pnpm --filter @paperclipai/db typecheck && pnpm --filter @paperclipai/server typecheck && pnpm --filter @paperclipai/ui typecheck` - `pnpm exec vitest run server/src/__tests__/issue-execution-policy.test.ts ui/src/components/IssueProperties.test.tsx` - `pnpm --filter @paperclipai/server typecheck && pnpm --filter @paperclipai/ui typecheck` - `pnpm exec vitest run ui/src/components/IssueMonitorActivityCard.test.tsx ui/src/components/IssueProperties.test.tsx` - `pnpm --filter @paperclipai/ui typecheck` - Storybook screenshot captured from `http://127.0.0.1:6006/iframe.html?viewMode=story&id=product-issue-monitor-surfaces--monitor-surfaces` with Playwright. ## Screenshots  ## Risks - Medium: this changes heartbeat recovery behavior for scheduled external-service waits, so regressions could affect wake timing or recovery issue creation. - Migration risk is reduced by using `IF NOT EXISTS` for the new issue monitor columns and index. - External monitor references are treated as secret-adjacent and are intentionally omitted from visible activity/wake payloads. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent with repository tool use and terminal execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots or Storybook review surfaces - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-03 08:58:53 -05:00
Dotta	570a4206da	[codex] Recover productive terminal continuations (#4956) ... ## Thinking Path > - Paperclip orchestrates AI agents through issue-scoped heartbeat runs > - Recovery logic decides whether in-progress work still has a live path after a terminal run > - A productive terminal continuation can still leave an issue stranded when no active run or wake remains > - Treating that state as healthy leaves work stuck despite evidence that more action is needed > - This pull request re-enqueues recovery for productive terminal continuations that left no live path > - The benefit is fewer silently stranded in-progress issues after agents make partial progress ## What Changed - Reclassified successful-but-productive terminal continuations as recoverable when no live path remains. - Enqueue a follow-up recovery wake with the original run id and continuation metadata. - Added regression tests covering productive terminal continuation recovery and advanced liveness handoff. ## Verification - `pnpm exec vitest run server/src/__tests__/heartbeat-process-recovery.test.ts server/src/__tests__/run-continuations.test.ts` ## Risks - Medium risk: recovery may schedule one more follow-up where Paperclip previously considered the work observed. The existing uniqueness, budget, and escalation checks still constrain retry loops. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent, tool use and local command execution. Exact context window was not exposed in the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-01 11:57:23 -05:00
Dotta	ad5432fece	[codex] Harden issue recovery reliability (#4875) ... ## Thinking Path > - Paperclip is the control plane for autonomous agent companies, so non-terminal issue state must always have a clear live, waiting, or recovery owner. > - This change stays inside the server reliability and liveness subsystem for assigned issue recovery, blocker attention, and live-run polling. > - Closed PR #4860 mixed this reliability work with separate mutation-boundary policy changes, which made review and merge risk too broad. > - [PAP-2981](/PAP/issues/PAP-2981) asked for a replacement PR containing only the remaining reliability slice and explicitly excluding user-assignment and execution-policy restrictions. > - Follow-up review also split `advanced` run-liveness continuation behavior out of this PR so it can be reviewed separately. > - The implementation hardens repeated recovery escalation, expands blocker-attention coverage for explicit waiting and recovery paths, and caps company live-run polling defaults. > - The benefit is a smaller reliability PR that improves liveness behavior without changing agent/user mutation authorization boundaries or `advanced` continuation semantics. ## What Changed - Avoid repeated liveness escalation updates when the source issue is already blocked by the same open escalation. - Treat open liveness escalation recovery issues, their source issues, and their leaf blockers as covered waiting paths in blocker attention. - Cap default company live-run polling at 50 rows for both `minCount` and `limit`, including explicit zero values, to avoid unbounded responses. - Preserve the existing behavior where succeeded `advanced` runs are considered productive/healthy for stranded-work recovery and are not actionable bounded run-liveness continuations. - Added focused server coverage for recovery dedupe, blocker attention, liveness escalation, run continuations, and live-run polling. ## Verification - `pnpm install --frozen-lockfile` - `pnpm exec vitest run server/src/__tests__/heartbeat-process-recovery.test.ts server/src/__tests__/heartbeat-issue-liveness-escalation.test.ts server/src/__tests__/issue-blocker-attention.test.ts server/src/__tests__/run-continuations.test.ts server/src/__tests__/agent-live-run-routes.test.ts` - Result: 5 files passed, 63 tests passed. - `pnpm --filter @paperclipai/server typecheck` - Result: passed. - No UI changes; screenshots are not applicable. ## Risks - Recovery and blocker-attention classification changes can affect which blocked chains are shown as covered versus needing attention. - Live-run polling now treats omitted, invalid, or non-positive `limit` / `minCount` values as the capped default of 50. - `advanced` run-liveness continuation behavior is intentionally excluded from this PR and split for separate review. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5, code execution and GitHub CLI tool use, medium reasoning effort. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-30 16:44:28 -05:00
Dotta	1991ec9d6f	[codex] Split backend control-plane QoL slice (#4700) ... ## Thinking Path > - Paperclip is the control plane for autonomous AI companies, so backend task ownership, recovery, review visibility, and company-scoped limits need to stay enforceable without UI-only coupling. > - Closed PR #4692 bundled those backend changes with UI workflow, docs, skills, workflow, and lockfile churn. > - PAP-2694 asks for a clean backend/control-plane slice from that closed branch. > - This branch starts from current `master` and mines only the `cli`, `packages/db`, `packages/shared`, and `server` contracts/tests needed for the backend behavior. > - It explicitly excludes UI workflow/performance work, `.github/workflows/pr.yml`, `pnpm-lock.yaml`, docs, skills, package-script, adapter UI build-config, and perf fixture script changes; the only UI files are fixture/test updates required by the tightened shared `Company` contract. > - The benefit is a smaller reviewable PR that preserves the control-plane fixes while staying under Greptile s 100-file review limit. ## What Changed - Added company-scoped attachment-size limits through DB schema/migrations, shared company portability contracts, CLI import/export coverage, and server attachment upload enforcement. - Added productivity review service/API behavior for no-comment streak, long-active, and high-churn review issues, including request-depth clamping and issue summary exposure. - Hardened issue ownership and recovery/control-plane paths: peer-agent mutation denial, issue tree pause/resume behavior, stranded recovery origins, and related activity/test coverage. - Preserved related backend contract updates for routine timestamp variables and managed agent instruction bundles because they live in shared/server contracts from the source branch. - Addressed Greptile feedback by making `Company.attachmentMaxBytes` non-optional, simplifying review request-depth clamping, fixing the migration final newline, and enforcing the process-level attachment cap as the final ceiling for uploads. - Added minimal company fixtures needed for repo-wide typecheck/build and kept the PR to 66 changed files with forbidden/non-slice paths excluded. ## Verification - `pnpm install --frozen-lockfile` - `git diff --check origin/master..HEAD` - `git diff --name-only origin/master..HEAD | wc -l` -> 66 files - `git diff --name-only origin/master..HEAD -- .github/workflows/pr.yml pnpm-lock.yaml package.json doc skills .agents scripts packages/adapters` -> no output - `pnpm exec vitest run --config vitest.config.ts packages/shared/src/validators/issue.test.ts packages/shared/src/routine-variables.test.ts packages/shared/src/adapter-types.test.ts cli/src/__tests__/company-import-export-e2e.test.ts cli/src/__tests__/company.test.ts server/src/__tests__/productivity-review-service.test.ts server/src/__tests__/issue-tree-control-service.test.ts server/src/__tests__/issue-tree-control-routes.test.ts server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts server/src/__tests__/issue-attachment-routes.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts server/src/__tests__/issues-service.test.ts` -> 12 files, 147 tests passed - `pnpm exec vitest run --config vitest.config.ts cli/src/__tests__/company-delete.test.ts cli/src/__tests__/company-import-export-e2e.test.ts server/src/__tests__/productivity-review-service.test.ts` -> 3 files, 18 tests passed - `pnpm exec vitest run --config vitest.config.ts server/src/__tests__/issue-attachment-routes.test.ts` -> 1 file, 6 tests passed - `pnpm --filter @paperclipai/db typecheck && pnpm --filter @paperclipai/shared typecheck && pnpm --filter @paperclipai/server typecheck && pnpm --filter paperclipai typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck && pnpm --filter @paperclipai/ui build` ## Risks - Includes migrations `0073_shiny_salo.sql` and `0074_striped_genesis.sql`; merge ordering matters if another PR adds migrations first. - This is intentionally backend-only apart from fixture/test updates forced by shared type correctness; UI affordances from PR #4692 are not present here and should land in separate UI slices. - The worktree install emitted plugin SDK bin-link warnings for unbuilt plugin packages, but the targeted tests and package typechecks completed successfully. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected; check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent, tool-enabled terminal/GitHub workflow. Exact runtime context window was not exposed by the harness. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-28 16:46:45 -05:00
Dotta	68c37660f0	Dispatch assigned todo work during recovery sweeps (#4614) ... ## Thinking Path > - Paperclip orchestrates AI agents for autonomous companies. > - Agent assignments must reliably turn into heartbeat work without board operators manually nudging stuck tasks. > - The stranded-assignment recovery sweep already handles failed or lost runs. > - But assigned `todo` issues with no prior run could sit idle because there was nothing to retry or recover. > - This pull request dispatches those never-started assigned todos as normal assignment wakes. > - The benefit is that recovery fixes missed initial dispatches without creating unnecessary recovery issues. ## What Changed - Added an initial assigned-todo dispatch path to the recovery service when an assigned `todo` issue has no heartbeat run yet. - Reused invocation budget hard-stop checks before dispatching or requeueing recovery work. - Counted `assignmentDispatched` in startup/scheduled recovery logs. - Added heartbeat recovery regressions for first dispatch, duplicate queued wake prevention, budget-blocked skips, and paused-agent skips. ## Verification - `pnpm exec vitest run server/src/__tests__/heartbeat-process-recovery.test.ts` ## Risks - Low to medium risk: this changes liveness recovery behavior for assigned `todo` issues, but it stays on the existing assignment wake path and skips paused or budget-blocked agents. - No migrations. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent based on GPT-5, tool-enabled local repository and shell access, Paperclip heartbeat context. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge	2026-04-27 20:02:44 -05:00
Dotta	7a9b3a6037	[codex] Harden recovery issue handling (#4600) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The control plane must recover stranded agent work without creating new operational loops > - Stranded recovery issues can themselves fail, and exposing raw retry errors in comments can leak sensitive adapter details > - New local companies also should not force a hire-approval gate unless operators enable that policy > - This pull request hardens recovery issue handling, redacts retry failure details in issue copy, preserves `maxConcurrentRuns: 1`, and flips new-hire approval to an opt-in default > - The benefit is safer automatic recovery and smoother default company setup without hidden migration conflicts ## What Changed - Added migration `0071_default_hire_approval_off` and updated company schema/import/export/docs so hire approvals default off and serialize only when enabled. - Added migration `0072_large_sandman` with a partial unique index preventing duplicate active stranded recovery issues for the same source issue. - Blocked failed `stranded_issue_recovery` issues in place instead of creating nested recovery issues. - Redacted latest retry failure details from recovery issue comments while still linking reviewers to run evidence. - Allowed `maxConcurrentRuns: 1` to be honored by heartbeat concurrency normalization. - Added focused regression coverage for recovery recursion, redaction, migration ordering, and concurrency behavior. ## Verification - `pnpm --filter @paperclipai/db run check:migrations` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/recovery-classifiers.test.ts` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/company-portability.test.ts --pool=forks --poolOptions.forks.isolate=true` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/agent-permissions-routes.test.ts --pool=forks --poolOptions.forks.isolate=true` - `pnpm --filter @paperclipai/server typecheck` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/heartbeat-process-recovery.test.ts --pool=forks --poolOptions.forks.isolate=true` exits 0, but this host skipped the embedded Postgres tests with the existing init guard. - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/heartbeat-dependency-scheduling.test.ts --pool=forks --poolOptions.forks.isolate=true` exits 0, but this host skipped the embedded Postgres tests with the existing init guard. ## Risks - Migration risk is low but this PR intentionally owns both new migrations to avoid separate PR migration-journal conflicts. - Recovery comments now require operators to inspect linked run evidence for details instead of reading raw errors inline. - The hire approval default changes behavior for newly created/imported companies only; existing persisted company settings are not changed except by the SQL default for future rows. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent, tool-enabled terminal/GitHub workflow, reasoning mode active. Context window not exposed in this environment. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-27 15:02:47 -05:00
Dotta	fda296ee4f	[codex] Add configurable liveness auto-recovery controls (#4587) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Heartbeat liveness recovery decides when stalled issue trees need manager-visible follow-up. > - Automatic recovery issue creation is useful, but operators need instance-level controls for how aggressive it is. > - Without controls, recovery behavior is harder to tune for local development, production operations, and noisy edge cases. > - This pull request adds configurable liveness auto-recovery settings across shared contracts, API routes, services, and the instance experimental settings UI. > - The benefit is that operators can keep liveness findings advisory or enable bounded recovery automation with explicit intervals and lookback windows. ## What Changed - Added shared types and validators for liveness auto-recovery settings. - Extended instance settings routes and services to persist and validate the new controls. - Wired heartbeat/recovery services to honor enablement, minimum interval, and lookback settings. - Added UI controls for liveness recovery under instance experimental settings. - Covered the new server behavior with instance settings and liveness escalation tests. ## Verification - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/heartbeat-issue-liveness-escalation.test.ts server/src/__tests__/instance-settings-routes.test.ts --pool=forks --poolOptions.forks.isolate=true` - `pnpm --filter @paperclipai/shared typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` ## Risks - Moderate behavioral risk because recovery automation timing changes when enabled; defaults keep existing advisory behavior unless the setting is turned on. - No database migration in this PR; settings are stored through the existing instance settings path. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, `gpt-5`, coding model with tool use and local command execution; context window not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-27 08:46:44 -05:00
Dotta	82e257c7ba	Cancel stale queued heartbeats when issue graph changes (PAP-2314) (#4534) ... Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-04-26 21:17:38 -05:00
Dotta	73fbdf36db	Gate stale-run watchdog decisions by board access (#4446) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The run ledger surfaces stale-run watchdog evaluation issues and recovery actions > - Viewer-level board users should be able to inspect status without getting controls that the server will reject > - The UI also needs enough board-access context to know when to hide those decision actions > - This pull request exposes board memberships in the current board access snapshot and gates watchdog action controls for known viewer contexts > - The benefit is clearer least-privilege UI behavior around recovery controls ## What Changed - Included memberships in `/api/cli-auth/me` so the board UI can distinguish active viewer memberships from operator/admin access. - Added the stale-run evaluation issue assignee to output silence summaries. - Hid stale-run watchdog decision buttons for known non-owner viewer contexts. - Surfaced watchdog decision failures through toast and inline error text. - Threaded `companyId` through the issue activity run ledger so access checks are company-scoped. - Added IssueRunLedger coverage for non-owner viewers. ## Verification - `pnpm exec vitest run --project @paperclipai/ui ui/src/components/IssueRunLedger.test.tsx` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` ## Risks - Medium-low risk. This is a UI gating change backed by existing server authorization. - Local implicit and instance-admin board contexts continue to show watchdog decision controls. - No migrations. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent, tool-enabled with shell/GitHub/Paperclip API access. Context window was not reported by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-04-24 19:25:23 -05:00
Dotta	5a0c1979cf	[codex] Add runtime lifecycle recovery and live issue visibility (#4419)	2026-04-24 15:50:32 -05:00